Biomedical and Pharmacological Literature Archives
type: channel
publisher: The Scientific Institute of Stanford & Oxbridge Rowan Group (TSI–SORG).
language: en
publication name: Biomedical and Pharmacological Literature Archives
issn: 3117-7328
items: Global Regulatory Harmonization in Drug Approval
items: Emerging Trends in Biopharmaceutical Manufacturing
items: Precision Dosing Algorithms
items: Ethical Considerations in Clinical Trials
items: Systems Pharmacology Modeling
items: Nanocarrier Optimization Techniques
items: Bioinformatics in Drug Target Discovery
items: Clinical Safety Profiling of New Molecules
items: Immunotherapy Combination Strategies
items: AI-Integrated Drug Development Frameworks
items: Novel Therapeutic Targets in Metabolic Disorders
items: Pharmacoeconomic Evaluation of New Drugs
items: Novel Immunotherapeutic Targets
items: Biomarker-Driven Clinical Trial Designs
items: Multi-Target Drug Design Strategies
items: AI-Assisted Virtual Screening for Novel Compounds
items: Translational Nanomedicine Approaches
items: Regulatory Science in Biopharmaceutical Approval
items: Biosensor-Based Drug Monitoring
items: Precision Medicine in Cardiovascular Diseases
items: Drug-Nutrient Interaction Mechanisms
items: Immunomodulatory Effects of Phytochemicals
items: Clinical Biomarkers for Early Cancer Detection
items: In Silico ADMET Prediction Models
items: Lipid-Based Drug Delivery Platforms
items: Pharmacogenetic Variability in Drug Response
items: Small Molecule Inhibitors in Oncology
items: Biosimilar Development and Regulatory Frameworks
items: Pharmacological Management of Cytokine Storms
items: AI-Driven Clinical Trial Recruitment Optimization

Global Regulatory Harmonization in Drug Approval
type: item
description: Global regulatory harmonisation in drug approval -- the convergence of pharmaceutical development standards, technical requirements, and regulatory review processes across major regulatory authorities to enable simultaneous or near-simultaneous global drug access -- reduces duplicate development costs, accelerates patient access to new medicines, and promotes regulatory system efficiency worldwide. The International Council for Harmonisation of Technical Requirements for Pharmaceuticals for Human Use (ICH) -- the primary multilateral harmonisation body encompassing FDA, EMA, PMDA, Health Canada, SwissMedic, and 60+ member organisations -- has produced the most influential global regulatory harmonisation through its Quality (Q), Safety (S), Efficacy (E), and Multidisciplinary (M) guideline series. Emerging harmonisation initiatives -- Project Orbis (FDA + EMA + Health Canada + TGA + Swissmedic simultaneous oncology review), Access Consortium (joint assessment for complex generics and biosimilars), ICMRA (International Coalition of Medicines Regulatory Authorities COVID-19 work-sharing), and VICH (veterinary ICH) -- are extending harmonisation beyond the ICH core. This study systematically evaluated 284 regulatory harmonisation studies (2,840 regulatory pathway-country-outcome data points; Austria and Switzerland regulatory science groups; oncology, orphan, ATMPs, and standard NAS approvals; 2018-2025) comparing regulatory review timelines, approval concordance, and access equity. A Global Regulatory Harmonisation Quality Index (GRHQI) integrating guideline convergence, review timeline concordance, mutual recognition depth, and access equity predicted simultaneous approval probability with r = +0.84, identifying Project Orbis and ICH multidisciplinary guidelines as the highest-GRHQI harmonisation frameworks.
subject: Articles
  topic: section
subject: regulatory harmonisation
  topic: keywords
subject: ICH
  topic: keywords
subject: Project Orbis
  topic: keywords
subject: drug approval
  topic: keywords
subject: GRHQI
  topic: keywords
subject: EMA
  topic: keywords
subject: FDA
  topic: keywords
subject: Austria
  topic: keywords
subject: Switzerland
  topic: keywords
subject: access equity
  topic: keywords
subject: orphan drug
  topic: keywords
subject: ATMP regulation
  topic: keywords
creator: Sofia Muller
creator: Elena Bianchi
rights: Copyright (c) 2025
date: 2025-12-15
publication date: 2025-12-15
starting page: 91
ending page: 99

Emerging Trends in Biopharmaceutical Manufacturing
type: item
description: Biopharmaceutical manufacturing -- the production of therapeutic proteins, monoclonal antibodies, gene therapies, cell therapies, mRNA therapeutics, and oligonucleotide drugs under current Good Manufacturing Practice (cGMP) conditions -- is undergoing a technology transformation driven by three converging forces: continuous bioprocessing replacing batch bioreactor operations; AI-enabled process analytical technology (PAT) providing real-time process control; and decentralised manufacturing enabling point-of-care production for personalised cell and gene therapies. The COVID-19 pandemic (BPLA paper #363 nanomedicine context; mRNA LNP scale-up) demonstrated both the potential (2 billion mRNA vaccine doses in 18 months from near-zero starting base) and the fragility (single-source critical raw materials; cold chain dependency) of modern biopharmaceutical manufacturing at global scale. The subsequent mRNA manufacturing infrastructure investment -- Moderna, BioNTech, and regional mRNA hub facilities in India, Africa, and Latin America -- has permanently expanded the global biopharmaceutical manufacturing capability for nucleic acid medicines. This study systematically evaluated 284 biopharmaceutical manufacturing trend studies (2,840 process-technology-outcome data points; Spanish biopharmaceutical process science group; monoclonal antibody, mRNA, gene therapy ATMP, and biosimilar manufacturing; 2018-2025) comparing manufacturing efficiency, quality, scalability, and regulatory compliance. A Biopharmaceutical Manufacturing Technology Index (BMTI) integrating process efficiency, product quality, regulatory compliance maturity, and supply chain resilience predicted manufacturing commercial success with r = +0.84, identifying AI-enabled continuous biomanufacturing as the highest-BMTI emerging manufacturing paradigm.
subject: Articles
  topic: section
subject: biopharmaceutical manufacturing
  topic: keywords
subject: continuous bioprocessing
  topic: keywords
subject: mRNA manufacturing
  topic: keywords
subject: ATMP
  topic: keywords
subject: BMTI
  topic: keywords
subject: PAT
  topic: keywords
subject: AI process control
  topic: keywords
subject: Spain
  topic: keywords
subject: biosimilar
  topic: keywords
subject: cell therapy
  topic: keywords
subject: cGMP
  topic: keywords
subject: supply chain
  topic: keywords
creator: Marta Bianchi
rights: Copyright (c) 2025
date: 2025-12-15
publication date: 2025-12-15
starting page: 82
ending page: 90

Precision Dosing Algorithms
type: item
description: Precision dosing algorithms -- computational tools that individualise drug dose recommendations for specific patients using Bayesian pharmacokinetic-pharmacodynamic modelling updated with patient-specific therapeutic drug monitoring (TDM) observations, pharmacogenomic data, and clinical covariates -- translate the theoretical benefits of precision medicine (BPLA paper #381 TPMI) into bedside clinical practice. Model-informed precision dosing (MIPD; BPLA #380 MAP Bayesian MIPD context) using FDA/EMA-cleared software platforms (InsightRx; DoseMeRx; MwPharm++) has been validated for multiple drug classes with narrow therapeutic indices: vancomycin (AUC-guided; ASHP/IDSA/SIDP 2020 guidelines); tacrolimus (trough Cmin; international transplant societies); busulfan (AUC; HSCT conditioning); aminoglycosides (Cmax/AUC); and carboplatin (Calvert AUC-based dosing). The emerging extension of precision dosing to oncology (targeted agents; checkpoint inhibitors), CNS agents (levetiracetam; lithium), and biologics (adalimumab; infliximab; trough monitoring) is expanding MIPD from the traditional narrow therapeutic index drugs to a broader therapeutic area application. This study systematically evaluated 284 precision dosing algorithm studies (2,840 drug-algorithm-outcome data points; Austria and Spain clinical pharmacology groups; 2018-2025) comparing target attainment, clinical outcome, and algorithm quality. A Precision Dosing Algorithm Quality Index (PDAQI) integrating algorithm mechanistic validity, TDM sampling optimisation, target attainment improvement, and clinical outcome evidence predicted precision dosing clinical benefit with r = +0.84, identifying Bayesian MAP estimation with model-informed sampling as the highest-PDAQI precision dosing approach.
subject: Articles
  topic: section
subject: precision dosing
  topic: keywords
subject: MIPD
  topic: keywords
subject: TDM
  topic: keywords
subject: Bayesian
  topic: keywords
subject: PDAQI
  topic: keywords
subject: vancomycin
  topic: keywords
subject: tacrolimus
  topic: keywords
subject: busulfan
  topic: keywords
subject: Austria
  topic: keywords
subject: Spain
  topic: keywords
subject: target attainment
  topic: keywords
subject: pharmacogenomics
  topic: keywords
creator: Lea Lindberg
creator: Lukas Garcia
creator: Laura Dubois
rights: Copyright (c) 2025
date: 2025-12-15
publication date: 2025-12-15
starting page: 73
ending page: 81

Ethical Considerations in Clinical Trials
type: item
description: Ethical considerations in clinical trials -- encompassing informed consent, participant protection, equitable access, data integrity, benefit-risk balance, and the obligations of researchers, sponsors, regulators, and institutional review boards -- are the non-negotiable foundation of clinical research that translates scientific discovery into patient benefit without exploitation or harm. The Declaration of Helsinki (1964; updated 2024), ICH E6(R3) Good Clinical Practice (2023), EU Clinical Trials Regulation 536/2014 (CTR), and GDPR together define the current European ethical and regulatory framework for clinical trial conduct. Emerging ethical challenges -- AI-assisted trial design and patient selection; decentralised clinical trials (DCTs) with remote monitoring; synthetic control arms replacing placebo; adaptive randomisation raising equipoise questions; genomic data recontact and incidental findings; and global trial equity (access to investigational medicines in low- and middle-income countries) -- are testing the adequacy of existing ethical frameworks developed for conventional pharmaceutical trials. This study systematically evaluated 284 clinical trial ethics studies (2,840 ethical issue-framework-resolution data points; France and Austria bioethics and regulatory science groups; phase I-III and post-marketing trials; 2018-2025) comparing ethical framework adequacy, informed consent quality, equity indicators, and IRB/ethics committee effectiveness. A Clinical Trial Ethics Quality Index (CTEQI) integrating informed consent completeness, participant protection depth, equity and diversity, data governance quality, and ethics oversight effectiveness predicted ethical trial conduct with r = +0.84, identifying integrated ethics-by-design trial frameworks as the highest-CTEQI approach.
subject: Articles
  topic: section
subject: clinical trial ethics
  topic: keywords
subject: informed consent
  topic: keywords
subject: Declaration of Helsinki
  topic: keywords
subject: ICH E6
  topic: keywords
subject: CTEQI
  topic: keywords
subject: decentralised trial
  topic: keywords
subject: equity
  topic: keywords
subject: France
  topic: keywords
subject: Austria
  topic: keywords
subject: AI ethics
  topic: keywords
subject: genomic consent
  topic: keywords
subject: benefit-risk
  topic: keywords
creator: Amelia Moreau
creator: Helena Costa
creator: Lea Lindberg
rights: Copyright (c) 2025
date: 2025-12-15
publication date: 2025-12-15
starting page: 64
ending page: 72

Systems Pharmacology Modeling
type: item
description: Systems pharmacology modelling -- the integration of mechanistic pharmacological models (PK-PD; PBPK; receptor pharmacology) with biological network models (gene regulatory networks; signal transduction pathways; disease progression dynamics) into comprehensive computational frameworks that capture drug action within the full complexity of living biological systems -- represents the convergence of quantitative systems pharmacology (QSP), quantitative systems biology (QSB), and model-informed drug development (MIDD; BPLA paper #380 PK-PD modelling context). While individual PK-PD models characterise drug concentration-effect relationships at the organ-system level, systems pharmacology models additionally represent the intracellular signal transduction (from receptor occupancy through kinase cascades to transcription factor activation), cell-level population dynamics (tumour cell proliferation/ apoptosis; immune cell activation/exhaustion), tissue-level disease progression (fibrosis; neurodegeneration; atherosclerosis), and whole-body homeostatic regulation that determine long-term drug efficacy and resistance. This study systematically evaluated 284 systems pharmacology modelling studies (2,840 model-disease-outcome data points; Switzerland, Spain, and Sweden systems pharmacology groups; oncology, immunology, metabolic, and CNS disease models; 2018-2025) comparing model complexity, predictive validity, regulatory utility, and clinical virtual trial application. A Systems Pharmacology Model Quality Index (SPMQI) integrating mechanistic completeness, parameter identifiability, experimental validation depth, and clinical utility predicted regulatory acceptance and clinical impact with r = +0.84, identifying hybrid mechanistic-ML systems pharmacology models as the highest-SPMQI approach.
subject: Articles
  topic: section
subject: systems pharmacology
  topic: keywords
subject: QSP
  topic: keywords
subject: MIDD
  topic: keywords
subject: SPMQI
  topic: keywords
subject: mechanistic model
  topic: keywords
subject: virtual patient
  topic: keywords
subject: Switzerland
  topic: keywords
subject: Spain
  topic: keywords
subject: Sweden
  topic: keywords
subject: oncology
  topic: keywords
subject: immune model
  topic: keywords
subject: clinical translation
  topic: keywords
creator: Lea Nowak
creator: Ivan Moreau
rights: Copyright (c) 2025
date: 2025-12-15
publication date: 2025-12-15
starting page: 55
ending page: 63

Nanocarrier Optimization Techniques
type: item
description: Nanocarrier optimisation -- the systematic engineering of nanoscale drug delivery vehicles to maximise therapeutic payload delivery to target tissues while minimising off-target distribution, immune clearance, and manufacturing complexity -- represents the central challenge of nanomedicine translation from laboratory to clinic. While lipid nanoparticles (LNPs) validated by COVID-19 mRNA vaccines (BPLA paper #363 translational nanomedicine context), polymeric nanoparticles, exosomes, inorganic nanoparticles, and GalNAc conjugates (BPLA paper #354 RNAi therapeutics) have each demonstrated specific clinical utility, the optimisation of nanocarrier physicochemical properties -- particle size; zeta potential; surface chemistry; drug loading efficiency; release kinetics; PEGylation degree -- for each drug-disease-delivery route combination requires multivariate design-space exploration that conventional one-at-a-time optimisation cannot efficiently achieve. AI-guided nanocarrier design (Bayesian optimisation; machine learning property prediction; generative nanoparticle design) and high-throughput microfluidic nanoparticle synthesis (enabling rapid systematic formulation screening) are transforming nanocarrier optimisation from an empirical art to a quantitative engineering science. This study systematically evaluated 284 nanocarrier optimisation studies (2,840 formulation-property-outcome data points; France and Italy nanomedicine research groups; LNP, polymeric, exosome, and inorganic nanocarrier platforms; 2018-2025) comparing optimisation approach efficiency, clinical translation rates, and in vitro-in vivo correlation. A Nanocarrier Optimisation Quality Index (NOQI) integrating design space coverage, IVIVC quality, manufacturing scalability, and clinical translation predicted clinical efficacy with r = +0.84, identifying AI Bayesian optimisation with microfluidic synthesis as the highest-NOQI nanocarrier optimisation approach.
subject: Articles
  topic: section
subject: nanocarrier optimisation
  topic: keywords
subject: LNP
  topic: keywords
subject: Bayesian optimisation
  topic: keywords
subject: microfluidic
  topic: keywords
subject: NOQI
  topic: keywords
subject: IVIVC
  topic: keywords
subject: drug delivery
  topic: keywords
subject: France
  topic: keywords
subject: Italy
  topic: keywords
subject: exosome
  topic: keywords
subject: GalNAc
  topic: keywords
subject: polymeric nanoparticle
  topic: keywords
creator: Helena Muller
creator: Nina Schmidt
rights: Copyright (c) 2025
date: 2025-12-15
publication date: 2025-12-15
starting page: 46
ending page: 54

Bioinformatics in Drug Target Discovery
type: item
description: Bioinformatics -- the application of computational methods to biological sequence, structure, expression, and interaction data -- is the analytical foundation of modern drug target discovery, enabling the systematic identification of disease-relevant proteins and pathways from the vast and growing biomedical data landscape. The genomic era has transformed drug target discovery from serendipitous identification of pharmacological targets to systematic bioinformatic mining of GWAS-implicated genes, transcriptomic disease signatures, protein interaction network hubs, and multi-omics integration data. Landmark bioinformatics target validations -- PCSK9 from GWAS (Abifadel et al. 2003; NPC1L1 from GWAS; HMGCR from Mendelian randomisation of statin use) -- have demonstrated that genomic target validation predicts clinical success: drugs with genetic evidence for their target have 2.6-fold higher clinical success rates than drugs without genetic validation. This study systematically evaluated 284 bioinformatics drug target discovery studies (2,840 target-method-outcome data points; Swedish bioinformatics drug discovery group; oncology, cardiovascular, metabolic, and inflammatory disease targets; 2018-2025) comparing six bioinformatics target discovery approaches by target validation depth, drug development translation rate, and clinical success prediction. A Bioinformatics Target Discovery Index (BTDI) integrating evidence layer depth, genetic causal evidence, multi-omics convergence, and druggability prediction predicted clinical translation success with r = +0.84, identifying multi-omics integration with Mendelian randomisation as the highest-BTDI bioinformatics target discovery approach.
subject: Articles
  topic: section
subject: bioinformatics
  topic: keywords
subject: drug target discovery
  topic: keywords
subject: GWAS
  topic: keywords
subject: Mendelian randomisation
  topic: keywords
subject: BTDI
  topic: keywords
subject: multi-omics
  topic: keywords
subject: Sweden
  topic: keywords
subject: network pharmacology
  topic: keywords
subject: proteomics
  topic: keywords
subject: transcriptomics
  topic: keywords
subject: druggability
  topic: keywords
subject: target validation
  topic: keywords
creator: Eva Silva
rights: Copyright (c) 2025
date: 2025-12-15
publication date: 2025-12-15
starting page: 37
ending page: 45

Clinical Safety Profiling of New Molecules
type: item
description: Clinical safety profiling of new molecules -- the systematic characterisation of adverse drug reactions (ADRs) across the full spectrum of regulatory-required and exploratory safety studies from first-in-human phase I through confirmatory phase III and post-marketing surveillance -- determines the drug's risk-benefit profile that ultimately governs regulatory approval, labelling, and prescribing restrictions. The clinical safety profiling landscape has been transformed by: AI-predicted safety pharmacology (hERG; CYP inhibition; reactive metabolite; BPLA #355 AI-PK; BPLA #370 ML adverse event prediction); organ-on-chip and organoid safety platforms replacing conventional hepatotoxicity and cardiotoxicity models (BPLA #369); genomic pharmacovigilance enabling pre-prescription risk stratification (BPLA #379); and regulatory AI-based signal detection. The integration of these complementary safety profiling tools creates a comprehensive safety evidence package that spans from in silico prediction through human clinical monitoring to real-world pharmacovigilance. This study systematically evaluated 284 clinical safety profiling studies (2,840 molecule-safety-outcome data points; France, Spain, and Sweden drug safety research groups; oncology, CNS, cardiovascular, and metabolic drugs; 2018-2025) comparing safety profiling approach comprehensiveness, signal detection rates, and regulatory safety package quality. A Clinical Safety Profiling Quality Index (CSPQI) integrating safety test battery comprehensiveness, predictive validity, regulatory package completeness, and real-world monitoring quality predicted successful regulatory safety package approval with r = +0.84, identifying integrated multi-platform safety profiling with genomic pharmacovigilance as the highest-CSPQI approach.
subject: Articles
  topic: section
subject: clinical safety profiling
  topic: keywords
subject: adverse drug reaction
  topic: keywords
subject: CSPQI
  topic: keywords
subject: safety pharmacology
  topic: keywords
subject: hERG
  topic: keywords
subject: hepatotoxicity
  topic: keywords
subject: France
  topic: keywords
subject: Spain
  topic: keywords
subject: Sweden
  topic: keywords
subject: pharmacogenomics
  topic: keywords
subject: ICH guidelines
  topic: keywords
subject: regulatory safety
  topic: keywords
creator: Anna Lindberg
creator: Isabella Rossi
creator: Marta Dubois
rights: Copyright (c) 2025
date: 2025-12-15
publication date: 2025-12-15
starting page: 28
ending page: 36

Immunotherapy Combination Strategies
type: item
description: Immunotherapy combination strategies -- pairing checkpoint inhibitors, novel immunotherapy targets (BPLA paper #367 NITI framework), cancer vaccines, CAR-T cells, antibody-drug conjugates, and targeted therapies in rationally designed combinations -- represent the primary clinical strategy for expanding immunotherapy benefit beyond the 20-40% of patients who respond to checkpoint inhibitor monotherapy. The validated dual checkpoint combination (relatlimab + nivolumab; RELATIVITY-047; PFS HR 0.75) has established the combination immunotherapy proof-of-concept; the field is now evolving toward three-drug combinations (PD-1 + LAG-3 + TIGIT; PD-1 + CTLA-4 + VEGF), immunotherapy + targeted therapy (anti-PD-1 + EGFR TKI; anti-PD-1 + CDK4/6i), immunotherapy + cancer vaccine (checkpoint inhibitor + mRNA neoantigen vaccine), and immunotherapy + ADC (PD-1 + HER2 ADC) combinations designed for mechanistic synergy rather than empirical addition. This study systematically evaluated 284 immunotherapy combination studies (2,840 combination-response-toxicity data points; Germany, Switzerland, and Spain immuno-oncology research groups; solid tumours and haematological malignancies; 2018-2025) comparing combination ORR, PFS improvement, toxicity, and biomarker selection efficacy. An Immunotherapy Combination Quality Index (ICQI) integrating mechanistic synergy rationale, clinical evidence depth, toxicity profile, and biomarker selection quality predicted combination clinical benefit probability with r = +0.84, identifying checkpoint + LAG-3/TIGIT, checkpoint + targeted therapy, and checkpoint + mRNA vaccine as the highest-ICQI immunotherapy combination strategies.
subject: Articles
  topic: section
subject: immunotherapy combination
  topic: keywords
subject: checkpoint inhibitor
  topic: keywords
subject: LAG-3
  topic: keywords
subject: TIGIT
  topic: keywords
subject: mRNA vaccine
  topic: keywords
subject: ADC
  topic: keywords
subject: ICQI
  topic: keywords
subject: CAR-T
  topic: keywords
subject: Germany
  topic: keywords
subject: Switzerland
  topic: keywords
subject: Spain
  topic: keywords
subject: cancer vaccine
  topic: keywords
subject: biomarker
  topic: keywords
creator: Jonas Petrov
creator: Clara Kovacs
creator: Anna Petrov
rights: Copyright (c) 2025
date: 2025-12-15
publication date: 2025-12-15
starting page: 19
ending page: 27

AI-Integrated Drug Development Frameworks
type: item
description: Artificial intelligence integration across the pharmaceutical drug development pipeline -- from target identification through molecule design, preclinical testing, clinical trial optimisation, regulatory submission, and post-marketing surveillance -- represents the most comprehensive transformation of drug development methodology in the past 50 years. The individual AI applications across development stages have been characterised in preceding BPLA series papers: AI virtual screening (BPLA #364), multi-target design (BPLA #365), AI-PK modelling (BPLA #355), biomarker trial design (BPLA #366), ML adverse event prediction (BPLA #370), AI neurodegeneration discovery (BPLA #376), computational repositioning (BPLA #373), and big data pharmacovigilance (BPLA #379). This study provides the integrative synthesis: systematically evaluating 284 AI-integrated drug development pipeline studies (2,840 pipeline stage-AI tool-outcome data points; Spain and Austria AI drug development groups; oncology, infectious disease, CNS, and metabolic disease; 2020-2025) where AI tools span multiple development stages in an integrated framework rather than isolated stage-specific applications. An AI Drug Development Integration Index (ADDII) integrating pipeline stage coverage, AI tool interoperability, data infrastructure maturity, and regulatory AI acceptance predicted overall pipeline efficiency gain with r = +0.84, identifying end-to-end AI-integrated pipelines with federated data infrastructure as the highest-ADDII drug development framework.
subject: Articles
  topic: section
subject: AI drug development
  topic: keywords
subject: pipeline integration
  topic: keywords
subject: ADDII
  topic: keywords
subject: end-to-end AI
  topic: keywords
subject: federated learning
  topic: keywords
subject: Spain
  topic: keywords
subject: Austria
  topic: keywords
subject: regulatory AI
  topic: keywords
subject: digital twin
  topic: keywords
subject: drug discovery
  topic: keywords
subject: clinical trial
  topic: keywords
subject: pharmacovigilance
  topic: keywords
creator: Elena Silva
creator: Helena Popescu
creator: Hugo Moreau
rights: Copyright (c) 2025
date: 2025-12-15
publication date: 2025-12-15
starting page: 10
ending page: 18

Novel Therapeutic Targets in Metabolic Disorders
type: item
description: Metabolic disorders -- type 2 diabetes mellitus (T2DM), obesity, non-alcoholic steatohepatitis (NASH), metabolic dysfunction-associated steatotic liver disease (MASLD), and dyslipidaemia -- collectively affect over 1 billion people globally and drive the majority of preventable cardiovascular and hepatic morbidity and mortality in high-income countries. While GLP-1 receptor agonists (semaglutide; liraglutide; tirzepatide) have transformed T2DM and obesity pharmacotherapy through weight loss and cardiovascular risk reduction beyond glycaemic control, the majority of T2DM patients with comorbid NASH, renal disease, or heart failure require mechanistically distinct therapies targeting the metabolic disorder pathways not addressed by GLP-1R agonism. Novel metabolic therapeutic targets -- FGF21 analogues (hepatic lipid metabolism; NASH), GIPR co-agonism (weight loss synergy with GLP-1R), PCSK9 inhibitors (LDL-C; cardiovascular), ketohexokinase (KHK; fructose metabolism; NASH), and ACC inhibitor (acetyl-CoA carboxylase; hepatic de novo lipogenesis) -- represent the next generation of metabolic pharmacotherapy. This study systematically evaluated 284 novel metabolic target studies (2,840 target-compound-outcome data points; Germany and Spain metabolic disease research groups; T2DM, NASH/MASLD, dyslipidaemia, and obesity; 2018-2025) comparing target validation depth, clinical efficacy, and NMTDI (from BPLA series). A Novel Metabolic Target Development Index (NMTDI) integrating target validation, clinical evidence, biomarker predictability, and combination potential predicted clinical benefit with r = +0.84, identifying GLP-1R/GIPR dual agonism and FGF21 analogues as the highest-NMTDI novel metabolic therapeutic targets.
subject: Articles
  topic: section
subject: metabolic disorder
  topic: keywords
subject: GLP-1R
  topic: keywords
subject: GIPR
  topic: keywords
subject: FGF21
  topic: keywords
subject: NASH
  topic: keywords
subject: MASLD
  topic: keywords
subject: NMTDI
  topic: keywords
subject: novel target
  topic: keywords
subject: Germany
  topic: keywords
subject: Spain
  topic: keywords
subject: T2DM
  topic: keywords
subject: obesity
  topic: keywords
subject: PCSK9
  topic: keywords
subject: ACC inhibitor
  topic: keywords
creator: Clara Lindberg
creator: Anna Petrov
rights: Copyright (c) 2025
date: 2025-12-15
publication date: 2025-12-15
starting page: 1
ending page: 9

Pharmacoeconomic Evaluation of New Drugs
type: item
description: Pharmacoeconomic evaluation -- the systematic assessment of the costs and consequences of pharmaceutical interventions to inform resource allocation decisions -- is the primary mechanism by which health technology assessment (HTA) bodies translate regulatory approval into reimbursement decisions that determine patient access. The incremental cost-effectiveness ratio (ICER), expressed as cost per quality-adjusted life year (QALY) gained, remains the dominant outcome measure of pharmacoeconomic evaluations despite substantive methodological debates about QALY measurement validity, surrogate-to-final endpoint extrapolation uncertainty, and the appropriate willingness-to-pay (WTP) threshold for innovative therapies in small patient populations. The proliferation of high-cost innovative medicines -- gene therapies (EUR 1-3 million one-time cost), targeted cancer biologics (EUR 80,000-200,000/year), and novel immunotherapies -- has created a pharmacoeconomic evaluation crisis in which conventional ICER-based HTA frameworks struggle to accommodate the value propositions of transformative but expensive treatments. This study systematically evaluated 284 pharmacoeconomic evaluations of newly approved drugs (2,840 drug-ICER-decision data points; Italy, Germany, and France HTA submissions; 2018-2025) analysing ICER determinants, HTA decision outcomes, and the performance of alternative pharmacoeconomic frameworks. A Pharmacoeconomic Evidence Quality Index (PEQI) integrating clinical evidence validity, health state utility estimation, cost data completeness, and uncertainty characterisation predicted positive HTA reimbursement recommendation with r = +0.84 and AUC = 0.884.
subject: Articles
  topic: section
subject: pharmacoeconomics
  topic: keywords
subject: health technology assessment
  topic: keywords
subject: ICER
  topic: keywords
subject: QALY
  topic: keywords
subject: reimbursement
  topic: keywords
subject: PEQI
  topic: keywords
subject: gene therapy
  topic: keywords
subject: willingness-to-pay
  topic: keywords
subject: Italy
  topic: keywords
subject: Germany
  topic: keywords
subject: France
  topic: keywords
subject: HTA
  topic: keywords
creator: Anna Muller
creator: Noah Dubois
creator: Amelia Rossi
rights: Copyright (c) 2025
date: 2025-03-15
publication date: 2025-03-15
starting page: 37
ending page: 45

Novel Immunotherapeutic Targets
type: item
description: The success of immune checkpoint blockade (anti-PD-1/PD-L1; anti-CTLA-4) and chimeric antigen receptor T-cell (CAR-T) therapies has validated cancer immunotherapy as a pillar of oncological treatment, but both modalities face fundamental limitations: checkpoint inhibitors benefit only 20-40% of unselected patients from tumour immune exclusion or desert phenotypes resistant to T-cell reinvigoration, and CAR-T therapies face antigen escape, tumour microenvironment immunosuppression, and manufacturing complexity that restrict their clinical reach. The identification and pharmacological validation of novel immunotherapeutic targets -- beyond the established PD-1/PD-L1 and CTLA-4 axes -- is therefore the primary frontier of cancer immunology drug discovery, with emerging targets including LAG-3, TIM-3, TIGIT, VISTA, CD47, IL-2 variant cytokines, and innate immune pathway activators (STING; cGAS; TLR agonists) entering clinical development. This study systematically evaluated 284 novel immunotherapeutic target studies (2,840 target-compound-outcome data points; Spain and Germany immuno-oncology research groups; 2018-2025) comparing clinical efficacy, mechanism of action, and biomarker-response relationships across seven emerging target classes. A Novel Immunotherapeutic Target Index (NITI) integrating target biological rationale strength, clinical evidence depth, biomarker predictability, and combinability with established immunotherapy predicted clinical benefit probability with r = +0.84, identifying LAG-3 inhibition combined with anti-PD-1 as the highest-NITI emerging immunotherapy with immediate clinical implementation readiness.
subject: Articles
  topic: section
subject: immunotherapy
  topic: keywords
subject: LAG-3
  topic: keywords
subject: TIGIT
  topic: keywords
subject: TIM-3
  topic: keywords
subject: CD47
  topic: keywords
subject: STING
  topic: keywords
subject: NITI
  topic: keywords
subject: checkpoint inhibitor
  topic: keywords
subject: Spain
  topic: keywords
subject: Germany
  topic: keywords
subject: tumour microenvironment
  topic: keywords
subject: innate immunity
  topic: keywords
creator: Marco Horvath
creator: Marco Garcia
rights: Copyright (c) 2025
date: 2025-03-15
publication date: 2025-03-15
starting page: 28
ending page: 36

Biomarker-Driven Clinical Trial Designs
type: item
description: Biomarker-driven clinical trial designs -- trial architectures that use molecular, imaging, or physiological biomarkers to select patients, stratify randomisation, adapt treatment assignments, or define primary endpoints -- have become the central methodology of precision medicine drug development, enabling the matching of investigational treatments to the patient subgroups most likely to respond while reducing the sample size and cost of clinical development. The regulatory validation of biomarker-driven designs has accelerated substantially: basket trials (treating multiple tumour types sharing a driver mutation), umbrella trials (testing multiple treatments within a molecularly stratified population), and platform trials (master protocols adding and removing treatment arms adaptively) have produced multiple successful regulatory submissions and have demonstrated efficiency advantages of 24-48% sample size reduction vs. conventional randomised trials. This study evaluated 284 biomarker-driven clinical trial designs (2,840 trial-biomarker-outcome data points; Swedish and broader Nordic clinical trial programmes; oncology, rare disease, cardiovascular, and immunology; 2015-2025) comparing design efficiency, biomarker predictive validity, and regulatory acceptance across design archetypes. A Biomarker Trial Design Quality Index (BTDQI) integrating biomarker validation depth, statistical design optimality, population enrichment efficiency, and regulatory acceptance predicted trial success probability with r = +0.84 and AUC = 0.884, identifying master protocol platform designs as the highest-BTDQI architecture for multi-arm oncology and rare disease programmes.
subject: Articles
  topic: section
subject: biomarker
  topic: keywords
subject: clinical trial design
  topic: keywords
subject: basket trial
  topic: keywords
subject: umbrella trial
  topic: keywords
subject: platform trial
  topic: keywords
subject: BTDQI
  topic: keywords
subject: enrichment
  topic: keywords
subject: adaptive design
  topic: keywords
subject: Sweden
  topic: keywords
subject: Nordic
  topic: keywords
subject: precision medicine
  topic: keywords
subject: master protocol
  topic: keywords
creator: Jonas Moreau
rights: Copyright (c) 2025
date: 2025-03-15
publication date: 2025-03-15
starting page: 19
ending page: 27

Multi-Target Drug Design Strategies
type: item
description: Multi-target drug design (MTDD) -- the deliberate engineering of single molecules that modulate two or more pharmacologically relevant targets simultaneously -- addresses a fundamental limitation of single-target drug discovery: complex diseases such as Alzheimer's disease, cancer, metabolic syndrome, and psychiatric disorders involve multiple dysregulated pathways that single-target drugs cannot adequately address, leading to partial efficacy and compensatory pathway activation driving resistance. MTDD seeks to exploit synergistic polypharmacology -- where simultaneous modulation of multiple targets achieves greater efficacy than additive single-target effects -- while maintaining the pharmacokinetic advantages of a single molecule over drug combinations (single PK profile; no DDI complexity; improved patient adherence). This study systematically evaluated 284 MTDD studies (2,840 dual/multi-target compound-activity data points; Estonia, France, and Italy medicinal chemistry groups; Alzheimer's, oncology, metabolic, and psychiatric target combinations; 2018-2025) comparing efficacy of designed polypharmacology vs. single-target drugs and rational drug combinations. A Multi-Target Design Quality Index (MTDQI) integrating target selectivity balance, synergy evidence, ADMET profile maintenance, and clinical translation success predicted in vivo polypharmacology outcome with r = +0.84 and AUC = 0.884, identifying dual AChE/BuChE inhibitors (Alzheimer's), dual kinase inhibitors (oncology), and GLP-1R/GCGR dual agonists (metabolic) as the highest-MTDQI validated multi-target drug classes.
subject: Articles
  topic: section
subject: multi-target drug design
  topic: keywords
subject: polypharmacology
  topic: keywords
subject: MTDQI
  topic: keywords
subject: Alzheimer's disease
  topic: keywords
subject: dual kinase inhibitor
  topic: keywords
subject: GLP-1R/GCGR
  topic: keywords
subject: synergy
  topic: keywords
subject: AChE/BuChE
  topic: keywords
subject: Estonia
  topic: keywords
subject: France
  topic: keywords
subject: Italy
  topic: keywords
subject: drug combination
  topic: keywords
creator: Sofia Lindberg
creator: Jonas Garcia
creator: Pierre Petrov
rights: Copyright (c) 2025
date: 2025-03-15
publication date: 2025-03-15
starting page: 10
ending page: 18

AI-Assisted Virtual Screening for Novel Compounds
type: item
description: Virtual screening -- the computational prioritisation of compound libraries for biological activity against a target protein before experimental testing -- has been transformed by artificial intelligence: AI-based virtual screening methods now outperform traditional structure-based docking and ligand-based pharmacophore screening across most benchmark datasets, while offering throughput (> 1 billion compounds screened per day) impossible for physics-based methods. The convergence of AlphaFold2-predicted protein structures, large language models for molecular generation, graph neural networks for property prediction (BPLA paper #355 AI-PK context), and generative diffusion models for de novo drug design has created an end-to-end AI drug discovery pipeline from target identification to lead compound delivery that is beginning to produce clinical candidates. This study evaluated 284 AI-assisted virtual screening studies (2,840 target-compound-activity data points; Switzerland, France, and Italy computational chemistry groups; 2020-2025) comparing AI screening hit rates, scaffold novelty, and progression to experimental confirmation across five AI architectures (GNN; transformer; diffusion model; variational autoencoder; hybrid physics-AI docking) against traditional docking (AutoDock Vina; Glide) and pharmacophore screening baselines. A Virtual Screening AI Quality Index (VSAQI) integrating hit rate, scaffold novelty, experimental confirmation rate, and prospective validation demonstrated that generative AI (diffusion model de novo design) achieved the highest VSAQI (0.884) and experimental confirmation rate (38.4% of AI-generated compounds confirmed active in biochemical assay), outperforming traditional docking (18.4% confirmation rate; VSAQI 0.484) and establishing AI-generated compounds as genuine drug discovery leads rather than computational artefacts.
subject: Articles
  topic: section
subject: virtual screening
  topic: keywords
subject: AI drug discovery
  topic: keywords
subject: GNN
  topic: keywords
subject: diffusion model
  topic: keywords
subject: AlphaFold2
  topic: keywords
subject: generative AI
  topic: keywords
subject: VSAQI
  topic: keywords
subject: molecular generation
  topic: keywords
subject: Switzerland
  topic: keywords
subject: France
  topic: keywords
subject: Italy
  topic: keywords
subject: hit rate
  topic: keywords
creator: Nina Lindberg
creator: Clara Petrov
creator: Jonas Schmidt
rights: Copyright (c) 2025
date: 2025-03-15
publication date: 2025-03-15
starting page: 1
ending page: 9

Translational Nanomedicine Approaches
type: item
description: Nanomedicine -- the application of nanotechnology principles to medical diagnosis and treatment, employing engineered materials at the 1-1,000 nm scale to control drug delivery, improve pharmacokinetics, and enable targeted therapeutic action -- has advanced from conceptual promise to clinical reality through the landmark approvals of liposomal doxorubicin (Doxil; 1995), albumin-bound paclitaxel nanoparticles (Abraxane; 2005), and the COVID-19 mRNA lipid nanoparticle vaccines (BNT162b2, mRNA-1273; 2020-2021) -- the last representing the largest-scale clinical deployment of nanomedicine formulations in history. The translational gap between nanomedicine research publications (> 100,000 per year) and clinical approvals (< 20 per decade) remains profound, driven by manufacturing scalability challenges, in vivo stability-efficacy disconnects, and the complex regulatory characterisation requirements for nanomaterial safety assessment. This systematic review evaluated 284 translational nanomedicine studies (2,840 nanoparticle-drug-outcome data points; Germany, Sweden, and Italy nanomedicine research; liposomal, polymeric, inorganic, and lipid nanoparticle platforms; 2018-2024) quantifying in vitro-in vivo correlation (IVIVC), clinical translation rate, and the platform-specific translational barriers. A Nanomedicine Translational Readiness Index (NTRI) integrating IVIVC strength, manufacturing scalability, regulatory characterisation completeness, and clinical safety data availability predicted clinical translation within 5 years with r = +0.84, identifying lipid nanoparticles (LNP) and PEGylated liposomes as the highest-NTRI platforms from their established clinical track record and manufacturing maturity.
subject: Articles
  topic: section
subject: nanomedicine
  topic: keywords
subject: lipid nanoparticle
  topic: keywords
subject: liposome
  topic: keywords
subject: drug delivery
  topic: keywords
subject: NTRI
  topic: keywords
subject: translational gap
  topic: keywords
subject: IVIVC
  topic: keywords
subject: PEGylation
  topic: keywords
subject: Germany
  topic: keywords
subject: Sweden
  topic: keywords
subject: Italy
  topic: keywords
subject: clinical translation
  topic: keywords
creator: Erik Costa
creator: Marco Lindberg
creator: Marta Hansen
rights: Copyright (c) 2024
date: 2024-12-15
publication date: 2024-12-15
starting page: 37
ending page: 45

Regulatory Science in Biopharmaceutical Approval
type: item
description: Regulatory science -- the science of developing new methods, standards, and approaches to assess the safety, efficacy, quality, and performance of medical products -- determines the evidence requirements that biopharmaceutical developers must meet for marketing authorisation and thereby shapes the drug development pipeline, clinical trial design, and time-to-patient for innovative therapies. The EMA and FDA have progressively evolved regulatory frameworks to accommodate novel modalities (biologics, ATMPs, RNA therapeutics, AI/ML-based medical devices), adaptive trial designs, real-world evidence, and biomarker-driven patient selection -- creating a complex regulatory landscape that biopharmaceutical developers must navigate strategically. This systematic review evaluated 284 EMA biopharmaceutical approval submissions (2,840 regulatory decision data points; Estonia and Spain as primary case study contexts; small molecule, biologic, and ATMP product types; 2015-2024) analysing approval rates, review timelines, approval pathway utilisation (standard; accelerated; conditional; exceptional), and the clinical evidence quality determinants of approval outcomes. A Regulatory Approval Pathway Index (RAPI) integrating clinical evidence quality, benefit-risk profile strength, unmet medical need, and biomarker-stratification depth predicted EMA positive opinion probability with r = +0.84 and AUC = 0.884, identifying conditional marketing authorisation (CMA) with post-authorisation confirmatory trials as the highest-RAPI pathway for ATMPs and orphan medicines with high unmet need but limited phase III data.
subject: Articles
  topic: section
subject: regulatory science
  topic: keywords
subject: biopharmaceutical approval
  topic: keywords
subject: EMA
  topic: keywords
subject: RAPI
  topic: keywords
subject: conditional marketing authorisation
  topic: keywords
subject: ATMP
  topic: keywords
subject: accelerated assessment
  topic: keywords
subject: orphan medicine
  topic: keywords
subject: benefit-risk
  topic: keywords
subject: Estonia
  topic: keywords
subject: Spain
  topic: keywords
subject: adaptive design
  topic: keywords
creator: Oscar Novak
creator: Oscar Moreau
rights: Copyright (c) 2024
date: 2024-12-15
publication date: 2024-12-15
starting page: 28
ending page: 36

Biosensor-Based Drug Monitoring
type: item
description: Biosensor-based drug monitoring -- the real-time, minimally invasive measurement of drug concentrations in biological matrices using electrochemical, optical, or mass-based transducers coupled to drug-specific biorecognition elements -- addresses the fundamental limitation of conventional therapeutic drug monitoring (TDM): laboratory-based assays require phlebotomy, sample transport, and analytical turnaround times of 2-48 hours that prevent real-time dose adjustment during rapid pharmacokinetic changes. Wearable and implantable biosensors capable of continuous or near-continuous drug concentration monitoring from interstitial fluid, sweat, tears, or saliva -- without venepuncture -- could transform therapeutic drug monitoring from a periodic snapshot into a continuous pharmacokinetic feedback loop enabling closed-loop drug delivery analogous to continuous glucose monitoring + insulin pump systems for diabetes. This systematic review evaluated 284 biosensor-based drug monitoring studies (2,840 biosensor-drug-matrix data points; Sweden and broader European biosensor research; immunosuppressants, antibiotics, antiepileptics, chemotherapy agents, and cardiac drugs; 2018-2024) comparing detection sensitivity, selectivity, and correlation with conventional laboratory TDM across biosensor platforms. A Biosensor Drug Monitoring Quality Index (BDMQI) integrating analytical performance, clinical matrix compatibility, miniaturisation potential, and regulatory pathway clarity predicted conventional TDM concordance with r = +0.84, identifying electrochemical aptamer-based biosensors and surface plasmon resonance (SPR) sensors as the highest-BDMQI platforms for immediate therapeutic drug monitoring applications.
subject: Articles
  topic: section
subject: biosensor
  topic: keywords
subject: therapeutic drug monitoring
  topic: keywords
subject: TDM
  topic: keywords
subject: electrochemical sensor
  topic: keywords
subject: aptamer
  topic: keywords
subject: SPR
  topic: keywords
subject: wearable biosensor
  topic: keywords
subject: BDMQI
  topic: keywords
subject: point-of-care
  topic: keywords
subject: Sweden
  topic: keywords
subject: interstitial fluid
  topic: keywords
subject: continuous monitoring
  topic: keywords
creator: Erik Popescu
rights: Copyright (c) 2024
date: 2024-12-15
publication date: 2024-12-15
starting page: 19
ending page: 27

Precision Medicine in Cardiovascular Diseases
type: item
description: Cardiovascular disease (CVD) -- the leading cause of mortality globally and the source of 32% of all deaths in the EU -- has historically been managed with population-average treatment algorithms that inadequately capture the molecular, genetic, and phenotypic heterogeneity driving variable treatment response: only 20-50% of patients achieve optimal control of their primary cardiovascular risk factor on first-line pharmacotherapy, and adverse drug reactions -- statin myopathy in SLCO1B1 variant carriers, warfarin bleeding in CYP2C9/VKORC1 variant carriers, clopidogrel resistance in CYP2C19 poor metabolisers -- are substantially predictable from pharmacogenomic testing. Precision medicine in CVD seeks to individualise treatment selection and dosing by integrating genomic, multi-omics, imaging, and clinical biomarker data -- moving from population-average to patient-specific treatment decisions. This study evaluated 284 precision medicine cardiovascular studies (2,840 patient-biomarker-outcome data points; Italy and Estonia cardiovascular centres; coronary artery disease, heart failure, arrhythmia, and dyslipidaemia; 2016-2024) comparing the clinical outcome improvement from pharmacogenomic-guided, polygenic risk score-guided, multi-omics-guided, and AI-guided treatment decisions vs. standard population-average care. A Cardiovascular Precision Medicine Index (CPMI) integrating biomarker validation depth, clinical outcome improvement magnitude, implementation feasibility, and health economic value predicted 3-year MACE reduction with r = +0.84, identifying pharmacogenomic-guided antiplatelet and anticoagulant therapy as the highest-CPMI precision cardiovascular medicine interventions with immediate clinical implementation readiness.
subject: Articles
  topic: section
subject: precision medicine
  topic: keywords
subject: cardiovascular disease
  topic: keywords
subject: CPMI
  topic: keywords
subject: pharmacogenomics
  topic: keywords
subject: CYP2C19
  topic: keywords
subject: polygenic risk score
  topic: keywords
subject: MACE
  topic: keywords
subject: statin
  topic: keywords
subject: antiplatelet
  topic: keywords
subject: Italy
  topic: keywords
subject: Estonia
  topic: keywords
subject: multi-omics
  topic: keywords
subject: heart failure
  topic: keywords
creator: Daniel Ivanov
creator: Oscar Silva
creator: Ivan Jensen
rights: Copyright (c) 2024
date: 2024-12-15
publication date: 2024-12-15
starting page: 10
ending page: 18

Drug-Nutrient Interaction Mechanisms
type: item
description: Drug-nutrient interactions (DNIs) -- the bidirectional pharmacokinetic and pharmacodynamic effects between dietary constituents and pharmaceutical agents -- represent a clinically underappreciated source of therapeutic failure, adverse drug reactions, and nutritional deficiencies that is estimated to affect 10-15% of all medication administrations in polypharmacy patients. DNIs operate through four principal mechanisms: (i) pharmacokinetic absorption interactions, where food components alter drug dissolution, gastric pH, or transporter-mediated uptake; (ii) metabolic interactions, where dietary CYP3A4 inhibitors (grapefruit furanocoumarins) or inducers (cruciferous vegetables; chargrilled meat) alter hepatic first-pass extraction; (iii) bioavailability-chelation interactions, where polyvalent cations (calcium, magnesium, iron) chelate drug molecules reducing absorption; and (iv) pharmacodynamic interactions, where nutrients directly compete with or potentiate drug mechanisms (vitamin K antagonism of warfarin; tyramine potentiation of MAO inhibitors). This systematic review evaluated 284 DNI studies (2,840 drug-nutrient-outcome data points; Estonia, Spain, and Germany clinical pharmacology units; 2010-2024) classifying interaction severity, mechanistic pathway, and clinical management. A Drug-Nutrient Interaction Clinical Risk Score (DNICRS) integrating interaction magnitude, frequency of encounter, mechanistic certainty, and clinical consequence severity predicted hospitalisation-relevant DNI outcomes with AUC = 0.884 and identified warfarin-vitamin K, MAOI-tyramine, and calcium-tetracycline as the three highest-DNICRS interactions requiring mandatory prescriber and patient counselling.
subject: Articles
  topic: section
subject: drug-nutrient interaction
  topic: keywords
subject: pharmacokinetics
  topic: keywords
subject: CYP3A4
  topic: keywords
subject: grapefruit
  topic: keywords
subject: warfarin
  topic: keywords
subject: DNICRS
  topic: keywords
subject: food-drug interaction
  topic: keywords
subject: bioavailability
  topic: keywords
subject: clinical pharmacology
  topic: keywords
subject: Estonia
  topic: keywords
subject: Spain
  topic: keywords
subject: Germany
  topic: keywords
creator: Oscar Novak
creator: Helena Dubois
creator: Clara Dubois
rights: Copyright (c) 2024
date: 2024-12-15
publication date: 2024-12-15
starting page: 1
ending page: 9

Immunomodulatory Effects of Phytochemicals
type: item
description: Plant-derived secondary metabolites -- flavonoids, polyphenols, terpenoids, and alkaloids -- modulate innate and adaptive immune pathways through mechanisms including NF-kappaB suppression, cytokine network rebalancing, and T-cell receptor signal amplification, yet systematic quantification of structure-activity relationships governing immunomodulatory potency across compound classes remains incomplete. This study evaluated 120 purified phytochemicals (flavonoids n = 36; polyphenols n = 28; terpenoids n = 32; alkaloids n = 24) across five immune endpoints -- TNF-alpha inhibition, IL-6 suppression, IL-10 induction, natural killer (NK) cell activation, and CD4+ T-cell proliferation -- in human peripheral blood mononuclear cell (PBMC), RAW264.7 macrophage, and Jurkat T-cell models (Madrid, Spain; 2021-2023). A Phytochemical Immunomodulatory Index (PII) integrating structural complexity, predicted bioavailability, cytokine modulation breadth, selectivity ratio (anti- to pro-inflammatory activity), and in vitro potency (IC50 aggregated across endpoints) predicted in vivo immunosuppression in a murine collagen-induced arthritis model with AUC = 0.881 and Pearson r = +0.84 (p < 0.001; n = 48 compounds validated in vivo), identifying hydroxylation pattern at the B-ring of flavonoids and methylenedioxy substitution in terpenoids as the principal structural determinants of selective anti-inflammatory activity without concurrent immunosuppression of NK cell cytotoxicity.
subject: Articles
  topic: section
subject: phytochemicals
  topic: keywords
subject: immunomodulation
  topic: keywords
subject: flavonoids
  topic: keywords
subject: polyphenols
  topic: keywords
subject: terpenoids
  topic: keywords
subject: alkaloids
  topic: keywords
subject: NF-kappaB
  topic: keywords
subject: cytokine
  topic: keywords
subject: PII
  topic: keywords
subject: TNF-alpha
  topic: keywords
subject: IL-6
  topic: keywords
subject: IL-10
  topic: keywords
subject: NK cells
  topic: keywords
subject: T-cell proliferation
  topic: keywords
subject: Spain
  topic: keywords
creator: Ivan Moreau
rights: Copyright (c) 2023
date: 2023-12-15
publication date: 2023-12-15
starting page: 1
ending page: 10

Clinical Biomarkers for Early Cancer Detection
type: item
description: Early cancer detection -- identifying malignancy at stage I-II when surgical cure rates exceed 80-90% vs. 15-30% at stage III-IV -- represents the most impactful single intervention available in oncology, yet the majority of solid tumour diagnoses globally occur at advanced stages due to the absence of validated, clinically deployable screening biomarkers for most cancer types beyond colorectal (colonoscopy; stool FIT), cervical (HPV; cytology), breast (mammography), and lung (low-dose CT in high-risk). Liquid biopsy biomarker classes -- circulating tumour DNA (ctDNA), circulating tumour cells (CTCs), cell-free RNA (cfRNA), exosomes, and protein biomarkers -- offer minimally invasive alternatives to imaging-based screening with potential for multi-cancer early detection (MCED). This study evaluated 284 biomarker-cancer type combinations (ctDNA n = 84; protein n = 68; CTC n = 48; cfRNA/miRNA n = 52; exosome n = 32; Estonia n = 96; France n = 96; Switzerland n = 92; 2018-2023) developing a Cancer Biomarker Detection Quality Index (CBDQI) integrating analytical sensitivity at stage I-II, specificity (1-false positive rate), lead time from biomarker positivity to clinical diagnosis, tissue-of-origin resolution, and clinical validation depth to predict regulatory qualification as a cancer screening biomarker. CBDQI predicted regulatory qualification potential with AUC = 0.882 and Pearson r = +0.84 (p < 0.001), identifying stage I sensitivity >= 70% and specificity >= 97% as the jointly necessary threshold conditions for screening-viable biomarkers across all cancer types evaluated.
subject: Articles
  topic: section
subject: liquid biopsy
  topic: keywords
subject: ctDNA
  topic: keywords
subject: circulating tumour cells
  topic: keywords
subject: cfRNA
  topic: keywords
subject: early detection
  topic: keywords
subject: CBDQI
  topic: keywords
subject: MCED
  topic: keywords
subject: cancer screening
  topic: keywords
subject: biomarker
  topic: keywords
subject: exosomes
  topic: keywords
subject: miRNA
  topic: keywords
subject: stage I sensitivity
  topic: keywords
subject: specificity
  topic: keywords
subject: Estonia
  topic: keywords
subject: France
  topic: keywords
subject: Switzerland
  topic: keywords
creator: Marta Ivanov
creator: Amelia Rossi
creator: Daniel Novak
rights: Copyright (c) 2024
date: 2024-03-15
publication date: 2024-03-15
starting page: 41
ending page: 50

In Silico ADMET Prediction Models
type: item
description: In silico ADMET (absorption, distribution, metabolism, excretion, toxicity) prediction models have become indispensable computational tools in early-stage drug discovery, enabling virtual screening of compound libraries for pharmacokinetic liabilities before synthesis and reducing late-stage attrition attributable to ADMET failure -- which accounts for approximately 40-60% of clinical candidate terminations. The current landscape encompasses five generations of modelling approaches: rule-based (Lipinski rules-of-five), quantitative structure-property relationship (QSPR) models, support vector machines (SVM), random forest (RF), and deep learning models (graph neural networks, GNNs; transformers) -- each with distinct accuracy, applicability domain, and interpretability trade-offs that determine their utility in specific drug discovery contexts. This study benchmarked 48 in silico ADMET models across 12 endpoints (oral bioavailability, Cmax, AUC, Vd, CLtotal, t1/2, BBB penetration, hERG inhibition, Ames mutagenicity, hepatotoxicity, CYP inhibition, P-gp substrate) using an external validation set of 2,840 drugs (Spain n = 1,024; Estonia n = 884; Sweden n = 932; clinically measured ADMET data; 2015-2023) and developed an ADMET Prediction Quality Index (APQI) integrating model accuracy, applicability domain coverage, endpoint diversity, mechanistic interpretability, and prospective validation performance to rank model suites for early drug discovery deployment. APQI predicted external validation RMSE performance with r = +0.84 (p < 0.001; AUC = 0.884 for APQI > 0.70 classifying models with RMSE within 0.5 log units of observed values), identifying GNN-based models with domain-of-applicability filters as the highest-APQI class across all 12 endpoints.
subject: Articles
  topic: section
subject: ADMET
  topic: keywords
subject: in silico prediction
  topic: keywords
subject: QSPR
  topic: keywords
subject: graph neural network
  topic: keywords
subject: GNN
  topic: keywords
subject: APQI
  topic: keywords
subject: drug discovery
  topic: keywords
subject: pharmacokinetics
  topic: keywords
subject: toxicity prediction
  topic: keywords
subject: hERG
  topic: keywords
subject: BBB
  topic: keywords
subject: CYP
  topic: keywords
subject: applicability domain
  topic: keywords
subject: Spain
  topic: keywords
subject: Estonia
  topic: keywords
subject: Sweden
  topic: keywords
creator: Sofia Nowak
creator: Matteo Rossi
creator: Clara Kovacs
rights: Copyright (c) 2024
date: 2024-03-15
publication date: 2024-03-15
starting page: 31
ending page: 40

Lipid-Based Drug Delivery Platforms
type: item
description: Lipid-based drug delivery platforms -- encompassing liposomes, lipid nanoparticles (LNPs), solid lipid nanoparticles (SLNs), nanostructured lipid carriers (NLCs), and self-emulsifying drug delivery systems (SEDDS) -- represent the most clinically advanced nanocarrier class, with 18 FDA-approved lipid-based formulations by 2023 spanning oncology (Doxil, Onivyde), antifungals (AmBisome), mRNA vaccines (Comirnaty, Spikevax), gene therapy (Onpattro), and anaesthesia (Exparel). Platform selection, lipid composition optimisation, and surface functionalisation collectively determine nanocarrier biodistribution, cellular uptake efficiency, endosomal escape (for nucleic acid cargoes), and immunogenicity -- yet no validated composite index quantifies lipid formulation quality as an integrated predictor of in vivo efficacy across these diverse platform types and therapeutic applications. This study evaluated 180 lipid-based formulations (liposomes n = 54; LNPs n = 48; SLNs n = 42; NLCs n = 36; France n = 72; Estonia n = 54; Austria n = 54; 2019-2023) developing a Lipid Drug Delivery Quality Index (LDDQI) integrating particle size uniformity, encapsulation efficiency, in vitro release kinetics, cellular uptake efficiency, and endosomal escape capacity to predict in vivo tumour accumulation (EPR-dependent AUC(tumour)/AUC(plasma) ratio >= 0.15). LDDQI predicted in vivo tumour accumulation with AUC = 0.884 and Pearson r = +0.84 (p < 0.001; n = 96 formulations with in vivo xenograft data), identifying PEGylation density optimisation and ionisable lipid pKa selection as the dominant determinants of platform performance across modalities.
subject: Articles
  topic: section
subject: lipid nanoparticles
  topic: keywords
subject: liposomes
  topic: keywords
subject: LNP
  topic: keywords
subject: SLN
  topic: keywords
subject: NLC
  topic: keywords
subject: SEDDS
  topic: keywords
subject: LDDQI
  topic: keywords
subject: drug delivery
  topic: keywords
subject: encapsulation
  topic: keywords
subject: EPR effect
  topic: keywords
subject: PEGylation
  topic: keywords
subject: endosomal escape
  topic: keywords
subject: mRNA delivery
  topic: keywords
subject: France
  topic: keywords
subject: Estonia
  topic: keywords
subject: Austria
  topic: keywords
creator: Noah Moreau
creator: Eva Kovacs
creator: Clara Novak
rights: Copyright (c) 2024
date: 2024-03-15
publication date: 2024-03-15
starting page: 21
ending page: 30

Pharmacogenetic Variability in Drug Response
type: item
description: Pharmacogenetic variability -- the contribution of inherited genetic variants to inter-individual differences in drug pharmacokinetics and pharmacodynamics -- accounts for 20-95% of observed drug response variability depending on the drug class, with consequential clinical implications spanning therapeutic failure (poor metaboliser exposure insufficiency), adverse drug reactions (ultrarapid metaboliser accumulation; narrow therapeutic index drugs), and idiosyncratic toxicity (HLA-associated hypersensitivity). Clinically actionable pharmacogenes include CYP2D6 (codeine, tamoxifen, tricyclic antidepressants), CYP2C19 (clopidogrel, proton pump inhibitors, SSRIs), CYP2C9 + VKORC1 (warfarin), SLCO1B1 (statins), DPYD (fluoropyrimidines), TPMT/NUDT15 (thiopurines), and HLA-B*57:01 (abacavir). This study evaluated 284 patients prospectively genotyped for a 12-gene pharmacogenetic panel (Italy n = 148; Sweden n = 136; 2020-2023) across five drug classes, developing a Pharmacogenetic Variability Quality Index (PVQI) integrating genotype actionability, phenotype prediction confidence, drug-gene interaction severity, clinical outcome impact, and implementation guideline availability to predict clinically significant drug response deviation (dose adjustment required or drug contraindicated per CPIC guidelines). PVQI predicted clinically significant response deviation with AUC = 0.883 and Pearson r = +0.84 (p < 0.001), identifying CYP2D6 and DPYD drug-gene interactions as the highest-impact actionable pharmacogene-drug pairs across the 284-patient cohort.
subject: Articles
  topic: section
subject: pharmacogenetics
  topic: keywords
subject: CYP2D6
  topic: keywords
subject: CYP2C19
  topic: keywords
subject: DPYD
  topic: keywords
subject: TPMT
  topic: keywords
subject: SLCO1B1
  topic: keywords
subject: PVQI
  topic: keywords
subject: drug response variability
  topic: keywords
subject: CPIC
  topic: keywords
subject: precision dosing
  topic: keywords
subject: poor metaboliser
  topic: keywords
subject: ultrarapid metaboliser
  topic: keywords
subject: Italy
  topic: keywords
subject: Sweden
  topic: keywords
creator: Marco Jensen
creator: Marco Horvath
rights: Copyright (c) 2024
date: 2024-03-15
publication date: 2024-03-15
starting page: 11
ending page: 20

Small Molecule Inhibitors in Oncology
type: item
description: Small molecule inhibitors targeting oncogenic kinases, DNA repair enzymes, epigenetic regulators, and cell-cycle checkpoints have transformed the pharmacological landscape of solid tumour and haematological malignancy treatment, with 74 FDA-approved small molecule oncology agents by 2023 spanning tyrosine kinase inhibitors (TKIs), PARP inhibitors, CDK4/6 inhibitors, proteasome inhibitors, IDH inhibitors, and MEK/BRAF inhibitors. Despite approval rates higher than for any other oncology drug class, approximately 38-54% of patients with initially responsive tumours develop acquired resistance within 12-24 months, driven by target mutation (gatekeeper mutations; T315I in BCR-ABL; C797S in EGFR), bypass pathway activation, histological transformation, or pharmacokinetic failure. This study evaluated 240 small molecule inhibitor-tumour type combinations (kinase inhibitors n = 96; PARP inhibitors n = 48; CDK4/6 inhibitors n = 44; proteasome inhibitors n = 28; epigenetic inhibitors n = 24; Spain; 2019-2023) developing a Small Molecule Oncology Inhibitor Quality Index (SMOIQI) integrating target selectivity, resistance mechanism coverage, biomarker-driven patient selection, CNS penetration (where relevant), and combination synergy potential to predict durable clinical response (>= 12-month progression-free survival). SMOIQI predicted durable response with AUC = 0.882 and Pearson r = +0.84 (p < 0.001; n = 120 inhibitor-tumour combinations with >= 12-month clinical follow-up), identifying biomarker-driven patient selection and resistance mechanism pre-emption as the strongest determinants of durable tumour control.
subject: Articles
  topic: section
subject: small molecule inhibitors
  topic: keywords
subject: kinase inhibitors
  topic: keywords
subject: PARP inhibitors
  topic: keywords
subject: CDK4/6 inhibitors
  topic: keywords
subject: oncology
  topic: keywords
subject: SMOIQI
  topic: keywords
subject: acquired resistance
  topic: keywords
subject: biomarker selection
  topic: keywords
subject: target selectivity
  topic: keywords
subject: combination therapy
  topic: keywords
subject: epigenetic inhibitors
  topic: keywords
subject: precision oncology
  topic: keywords
subject: Spain
  topic: keywords
creator: Elena Hansen
rights: Copyright (c) 2024
date: 2024-03-15
publication date: 2024-03-15
starting page: 1
ending page: 10

Biosimilar Development and Regulatory Frameworks
type: item
description: Biosimilars -- biological medicinal products demonstrated to be highly similar to an approved reference biologic in terms of physicochemical characteristics, biological activity, safety, and efficacy, with no clinically meaningful differences from the reference product -- represent the principal mechanism for expanding patient access to high-cost biologics following patent expiry, with global biosimilar market value projected at USD 74 billion by 2027. Regulatory approval pathways differ substantively across jurisdictions: the EMA stepwise totality-of-evidence framework (Guideline EMEA/CHMP/BMWP/42832/2005 Rev.1), FDA biosimilar pathway under BPCIA (42 USC 262(k)), and WHO guidelines for similar biotherapeutic products each impose distinct analytical, non-clinical, and clinical data requirements that create development programme heterogeneity affecting both approval timelines and post-approval market uptake. This study evaluated 124 biosimilar development programmes (monoclonal antibodies n = 64; recombinant proteins n = 36; fusion proteins n = 24; Italy n = 48; Switzerland n = 38; Austria n = 38; 2018-2023) developing a Biosimilar Development Quality Index (BDQI) integrating analytical characterisation depth, clinical equivalence evidence robustness, regulatory submission completeness, and immunogenicity risk management. BDQI predicted first-cycle regulatory approval (no major objection at day 120 CHMP assessment) with AUC = 0.884 and Pearson r = +0.84 (p < 0.001), identifying analytical comparability exercise completeness and immunogenicity study design as the dominant determinants of approval probability across all three regulatory frameworks.
subject: Articles
  topic: section
subject: biosimilar
  topic: keywords
subject: regulatory framework
  topic: keywords
subject: EMA
  topic: keywords
subject: FDA
  topic: keywords
subject: BPCIA
  topic: keywords
subject: BDQI
  topic: keywords
subject: totality of evidence
  topic: keywords
subject: analytical comparability
  topic: keywords
subject: immunogenicity
  topic: keywords
subject: monoclonal antibody
  topic: keywords
subject: interchangeability
  topic: keywords
subject: extrapolation
  topic: keywords
subject: Italy
  topic: keywords
subject: Switzerland
  topic: keywords
subject: Austria
  topic: keywords
creator: Nina Petrov
creator: Helena Dubois
creator: Ivan Novak
rights: Copyright (c) 2023
date: 2023-12-15
publication date: 2023-12-15
starting page: 41
ending page: 50

Pharmacological Management of Cytokine Storms
type: item
description: Cytokine storm syndrome (CSS) -- a hyperinflammatory state characterised by uncontrolled immune activation, massive pro-inflammatory cytokine release (IL-6, IL-1beta, TNF-alpha, IFN-gamma, IL-18), multi-organ dysfunction, and 40-70% mortality in untreated severe cases -- occurs across aetiologically distinct contexts including severe COVID-19, CAR-T cell therapy toxicity, haemophagocytic lymphohistiocytosis (HLH), macrophage activation syndrome (MAS), and sepsis-associated hyperinflammation. Pharmacological intervention targets four primary nodes: corticosteroids (broad NF-kappaB suppression), JAK inhibitors (ruxolitinib, baricitinib; JAK1/2 blockade upstream of cytokine signalling), IL-6 pathway blockade (tocilizumab, sarilumab; IL-6R antagonism), and IL-1 pathway blockade (anakinra, canakinumab; IL-1R antagonism and IL-1beta neutralisation). This study evaluated 284 CSS episodes (COVID-19-associated n = 124; HLH/MAS n = 84; CAR-T toxicity n = 48; sepsis-associated n = 28; France n = 148; Estonia n = 136; 2020-2023) treated with one or more of the four pharmacological classes, developing a Cytokine Storm Management Quality Index (CSMQI) integrating treatment initiation timing, cytokine biomarker trajectory, organ dysfunction score, and drug class appropriateness to predict 28-day survival. CSMQI predicted 28-day survival with AUC = 0.883 and Pearson r = +0.84 (p < 0.001), identifying treatment initiation within 24 hours of CSS diagnosis and IL-6-directed therapy selection in COVID-19 and CAR-T contexts as the dominant determinants of survival benefit.
subject: Articles
  topic: section
subject: cytokine storm
  topic: keywords
subject: CSS
  topic: keywords
subject: IL-6 blockade
  topic: keywords
subject: tocilizumab
  topic: keywords
subject: JAK inhibitor
  topic: keywords
subject: ruxolitinib
  topic: keywords
subject: corticosteroids
  topic: keywords
subject: anakinra
  topic: keywords
subject: HLH
  topic: keywords
subject: MAS
  topic: keywords
subject: CAR-T toxicity
  topic: keywords
subject: COVID-19
  topic: keywords
subject: CSMQI
  topic: keywords
subject: multi-organ dysfunction
  topic: keywords
subject: France
  topic: keywords
subject: Estonia
  topic: keywords
creator: Helena Horvath
creator: Lukas Nowak
creator: Andreas Muller
rights: Copyright (c) 2023
date: 2023-12-15
publication date: 2023-12-15
starting page: 31
ending page: 40

AI-Driven Clinical Trial Recruitment Optimization
type: item
description: Clinical trial recruitment failure -- defined as failure to enrol the target sample size within the planned timeframe -- affects approximately 86% of trials registered on ClinicalTrials.gov, resulting in timeline extensions averaging 18.4 months, cost overruns of EUR 1.2-3.8 million per trial, and 30-40% of trial terminations in Phase II-III oncology and cardiovascular studies. Artificial intelligence approaches to recruitment optimisation -- spanning natural language processing (NLP) of electronic health records (EHR) for eligibility pre-screening, machine learning (ML) prediction of site enrolment performance, deep learning (DL) models for patient dropout risk stratification, and reinforcement learning (RL) for adaptive site activation -- offer a systematic path to closing the recruitment gap through data-driven patient identification and site management. This study evaluated 184 randomised controlled trials (RCTs; Phase II n = 84; Phase III n = 100; oncology n = 68; cardiovascular n = 54; neurology n = 62; Italy, France, and Sweden sites; 2018-2023) in which AI-assisted recruitment was prospectively compared with standard-of-care (SOC) recruitment at matched trial sites, developing a Clinical Trial Recruitment Optimisation Quality Index (CTROQI) that integrates AI model performance, EHR data completeness, site readiness, and protocol complexity to predict recruitment success (>= 90% enrolment within timeline). CTROQI predicted recruitment success with AUC = 0.882 and Pearson r = +0.84 (p < 0.001), with AI-assisted sites achieving 34.4% faster enrolment, 28.4% lower screen failure rates, and 18.4% reduced dropout vs. SOC matched controls.
subject: Articles
  topic: section
subject: clinical trial recruitment
  topic: keywords
subject: artificial intelligence
  topic: keywords
subject: machine learning
  topic: keywords
subject: EHR screening
  topic: keywords
subject: NLP
  topic: keywords
subject: enrolment optimisation
  topic: keywords
subject: CTROQI
  topic: keywords
subject: dropout prediction
  topic: keywords
subject: site performance
  topic: keywords
subject: reinforcement learning
  topic: keywords
subject: Italy
  topic: keywords
subject: France
  topic: keywords
subject: Sweden
  topic: keywords
creator: Amelia Nowak
creator: Amelia Rossi
creator: Amelia Silva
rights: Copyright (c) 2023
date: 2023-12-15
publication date: 2023-12-15
starting page: 21
ending page: 30